Journal Paper

1. "A semi-blind deconvolution method to estimate and remove optical aberrations"
   Alireza Arandian, Mohammad Ismail Zibaii, Hamin Latifi
   OPTIK, Vol. 302, pp.171715-171723, 2024
2. "Effects of optogenetic and visual stimulation on gamma activity in the visual cortex"
   Fereshteh Arab, Sareh Rostami, Mohammad Dehghani-Habibabadi, Diego M. Mateos, Roisin Braddell, Felix Scholkmann, Mohammad Ismail Zibaii, Serafim Rodrigues, Vahid Salari, Mir-Shahram Safari
   NEUROSCIENCE LETTERS, Vol. 816, pp.137474-137495, 2023
3. "Sensitivity enhancement of the LSPR-based tapered optical fiber biosensor by variation of nanoparticle arrangement"
   Parisa Borjikhani, Mohammad Ismail Zibaii, Nosrat Granpayeh
   JOURNAL OF THE OPTICAL SOCIETY OF AMERICA B-OPTICAL PHYSICS, Vol. 40, pp.2968-2979, 2023
4. "The Auditory Brainstem Response (ABR) Test, Supplementary to Behavioral Tests for Evaluation of the Salicylate-Induced Tinnitus"
   Mitra Rezapour, Mehdi Akbari, Leila Dargahi, Mohammad Ismail Zibaii, Ali Shahbazi
   INDIAN JOURNAL OF OTOLARYNGOLOGY AND HEAD and NECK SURGERY, Vol. 75, pp.6-15, 2023
5. "Exogenous Cannabinoids Impair Effort-Related Decision-Making via Affecting Neural Synchronization between the Anterior Cingulate Cortex and Nucleus Accumbens"
   Zahra Fatahi, Mohammad Fatahi, Mirmohammadali Mirramezani Alizamini, Ahmad Ghorbani, Mohammad Ismail Zibaii, Abbas Haghparast
   Brain Sciences, Vol. 13, 2023
6. "Computational Modeling of Thermal Effects in Optogenetic Neurostimulation"
   Batul Nasrabadi, Mohammad Ismail Zibaii, Seyedeh Mahshad Hosseini
   International Journal of Optics and Photonics, Vol. 16, pp.61-68, 2022
7. "Simulation of nerve fiber based on anti-resonant reflecting optical waveguide"
   Marzieh Omidi, Mohammad Ismail Zibaii, Nosrat Granpayeh
   Scientific Reports, Vol. 12, 2022
8. "Optogenetic stimulation of entorhinal cortex reveals the implication of insulin signaling in adult rat's hippocampal neurogenesis"
   Sara Chavoshinezhad, Mohammad Ismail Zibaii, Mir Hossein Seyed Nazari, Abdolaziz Ronaghi, Afsaneh Asgari Taei, Ahmad Ghorbani, Sareh Pandamooz, Mohammad Saied Salehi, Neda Valian, Fereshteh Motamedi, Abbas Haghparast, Leila Dargahi
   PROGRESS IN NEURO-PSYCHOPHARMACOLOGY and BIOLOGICAL PSYCHIATRY, Vol. 111, 2021
9. "Optogenetic control of neural differentiation in Opto?mGluR6 engineered retinal pigment epithelial cell line and mesenchymal stem cells"
   Hoda Shams Najafabadi, Mehdi Sadeghi, Mohammad Ismail Zibaii, Zahra?Soheila Soheili, Shahram Samiee, Pouria Ghasemi illkhani abad, Mohammad Hosseini beyram abad, Hamid Gholami Pourbadie, Hamid Ahmadieh, Sepideh Taghizadeh, Ehsan Ranaei Pirmardan
   JOURNAL OF CELLULAR BIOCHEMISTRY, Vol. 122, pp.851-869, 2021
10. "Three-Dimensional Imaging in Stem Cell-Based Researches"
    Fariborz Nowzari, Huimei Wang, Arezoo Khoradmehr, Mandana Baghban, Neda Baghban, Alireza Arandian, Mahdi Muhaddesi, Iraj Nabipour, Mohammad Ismail Zibaii, Mostafa Najarasl, Payam Taheri, Hamin Latifi, Amin Tamadon
    Frontiers in Veterinary Science, Vol. 8, pp.1-18, 2021
11. "Fabricating an electroactive injectable hydrogel based on pluronic-chitosan/aniline-pentamer containing angiogenic factor for functional repair of the hippocampus ischemia rat model"
    Melika Nourbakhsh, Payam Zarrintaj, Seyed Hassan Jafari, Seyed Masoud Hosseini, Shayan Aliakbari, Hamid Gholami Pourbadie, Nima Naderi, Mohammad Ismail Zibaii, Saman Gholizadeh, Joshua D. Ramsey, Sabu Thomas, Mehdi Farokhi, Mohammad Reza Saeb
    MATERIALS SCIENCE & ENGINEERING C-BIOMIMETIC MATERIALS SENSORS AND SYSTEMS, Vol. 117, 2020
12. "Neural synchronization between the anterior cingulate and orbitofrontal cortices during effort-based decision making"
    Zahra Fatahi, Ahmad Ghorbani, Mohammad Ismail Zibaii, Abbas Haghparast
    NEUROBIOLOGY OF LEARNING AND MEMORY, Vol. 175, 2020
13. "Neurogenic differentiation of human dental pulp stem cells by optogenetics stimulation"
    Mahsa Niyazi, Mohammad Ismail Zibaii, Sara Chavoshinezhad, Hatef Ghasemi Hamidabadi, Leila Dargahi, Maryam Nazm Bojnordi, Rafieh Alizadeh, Mansooreh Heravi, Hedieh Karimitar, Mohammad Hosseini beyram abad, Elias Sadeghy Malvajerdy, Mir Hossein Seyed Nazari
    JOURNAL OF CHEMICAL NEUROANATOMY, Vol. 109, 2020
14. "Profilometry of an optical microfiber based on modal evolution"
    Forugh Jafari, Omidreza Ranjbar Naini, Mohammad Ismail Zibaii, Hamin Latifi
    OPTICS LETTERS, Vol. 45, pp.6607-6610, 2020
15. "Optogenetic control of perforant pathway kindled seizures by photoinhibition of CA3 after insertion of Jaws into CA3 neuronal cells"
    Mostafa Farzaneh, Mohammad Sayyah, Hadi Mirzapourdelavar, Hamid Gholami Pourbadie, Mohammad Ismail Zibaii, Hamin Latifi
    EXPERIMENTAL NEUROLOGY, Vol. 328, 2020
16. "Thyroid endocrine status and biochemical stress responses in adult male Wistar rats chronically exposed to pristine polystyrene nanoplastics"
    Fatemeh Amereh, Akbar Eslami, Simin Fazelipour, Mohammad Rafiee, Mohammad Ismail Zibaii, Mohammad Babaei
    Toxicology Research, Vol. 8, pp.953-963, 2019
17. "Multimode Fabry-Perot Interferometer Probe Based on Vernier Effect for Enhanced Temperature Sensing"
    André D. Gomes, Martin Becker, Jan Dellith, Mohammad Ismail Zibaii, Hamin Latifi, Manfred Rothhardt, Hartmut Bartelt, Orlando Fraz?o
    SENSORS, Vol. 19, 2019
18. "Optogenetic stimulation of the Anterior Cingulate Cortex Ameliorates Autistic-Like Behaviors in Rats Induced by Neonatal Isolation, Caudate Putamen as a Site for Alteration"
    ELHAM SADAT SEYEDJAVAD JAVAHERI, Mohammad Reza Bigdeli, Mohammad Ismail Zibaii, Lila Darghahi, Hamid Reza Pouretemad
    NEUROMOLECULAR MEDICINE, Vol. 21, pp.132-142, 2019
19. "Neuroprotective effect of monophosphoryl lipid A a detoxified lipid A derivative in photothrombotic model of unilateral selective hippocampal ischemia in rat"
    Hamid Gholami Pourbadie, Sayed Masoud Hosseini, Nima Naderi, Mohammad Sayyah, Mohammad Ismail Zibaii
    BEHAVIOURAL BRAIN RESEARCH, Vol. 347, pp.26-36, 2018
20. "Measurement of milli-Newton axial force and temperature using a hybrid microsilica sphere Fabry-Perot sensor"
    Omid Reza Ranjbar Naeini, Hamin Latifi, Mohammad Ismail Zibaii, ALI MOUSAVIAN
    OPTICS LETTERS, Vol. 43, pp.5210-5213, 2018
21. "Photothrombotically induced unilateral selective hippocampal ischemia in rat"
    Hamid Gholami Pourbadie, Sayed Masoud Hosseini, Nima Naderi, Mohammad Sayyah, Mohammad Ismail Zibaii
    JOURNAL OF PHARMACOLOGICAL AND TOXICOLOGICAL METHODS, Vol. 94, pp.77-86, 2018
22. "Sensitivity enhancement of cylindrically-symmetric optical fiber refractive index sensors by utilizing graphene"
    Hamed Nikbakht, Hamin Latifi, Masome Pak, Ebrahim Behroodi, Mohammadreza Oraie, Mohammad Ismail Zibaii
    OPTICS COMMUNICATIONS, Vol. 429, pp.1-4, 2018
23. "Epidermal neural crest stem cell-derived glia enhance neurotrophic elements in an ex vivo model of spinal cord injury"
    Abolhassan Ahmadiani, Leila Dargahi, Mohammad Nabiuni, Sareh Pandamooz, Mohammad S. Salehi, Mohammad Ismail Zibaii
    JOURNAL OF CELLULAR BIOCHEMISTRY, Vol. 119, pp.3486-3496, 2018
24. "Tunable Fano-Like Lineshape in an Adiabatic Tapered Fiber Coupled to a Hollow Bottle Microresonator"
    , Hamin Latifi, Omid Reza Ranjbar Naeini, Mohammad Ismail Zibaii, Ebrahim Behroodi, Amir Asadollahifanabonab
    JOURNAL OF LIGHTWAVE TECHNOLOGY, Vol. 36, pp.735-741, 2018
25. "Effect of acute and subchronic stress on electrical activity of basolateral amygdala neurons in conditioned place preference paradigm An electrophysiological study"
    Zahra Fatahi, Mohammad Ismail Zibaii, Abbas Haghparast
    BEHAVIOURAL BRAIN RESEARCH, Vol. 335, pp.19-25, 2017
26. "Plasmonic Circular Dichroism Study of Gold Nanorod-Quadruplex Nanobioconjugates"
    Bagheri Zeinab, Bijan Ranjbar, Azadeh Azizi, Hamin Latifi, Mohammad Ismail Zibaii, Tahereh Tohidi Moghadam
    Scientia Iranica, Vol. 25, pp.1783-1788, 2017
27. "Label Free Fiber Optic Apta-Biosensor for In-Vitro Detection of Dopamine"
    Mohammad Ismail Zibaii, Hamin Latifi, Amir Asadollahifanabonab, Amir Hossein Bayat, Leila Dargahi, Abbas Haghparast
    JOURNAL OF LIGHTWAVE TECHNOLOGY, Vol. 34, pp.4516-4524, 2016
28. "Dynamics of magnetic nano-flake vortices in Newtonian fluids"
    NASIMSADAT BAZAZZADEH, Seyed Majid Mohseni, , Mohammad Ismail Zibaii, Seyed mohammad sadegh Movahed, Gholamreza Jafari
    JOURNAL OF MAGNETISM AND MAGNETIC MATERIALS, Vol. 419, pp.547-552, 2016
29. "Simultaneous measurement of temperature and refractive index using focused ion beam milled Fabry-Perot cavities in optical fiber micro-tips"
    Ricardo M. André, Stephen C. Warren-Smith, Martin Becker, Jan Dellith, Manfred Rothhardt, Mohammad Ismail Zibaii, Hamin Latifi, Manuel B. Marques, Hartmut Bartelt, Orlando Fraz?o
    OPTICS EXPRESS, Vol. 24, pp.14053-14065, 2016
30. "Tip Sensor Probe for Changing Refractive Index Measurement in Small Volumes"
    Hamed Nikbakht, Hamin Latifi, Tahereh Amini, Mohammad Ismail Zibaii
    International Journal of Optics and Photonics, Vol. 8, pp.105-111, 2014
31. "Spectral properties and thermal stability of AS1411 G-quadruplex"
    Bagheri Zeinab, , Hamin Latifi, Mohammad Ismail Zibaii, ,
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, Vol. 72, pp.806-811, 2014
32. "Interrogation Sensing Scheme Based on a Figure-of-Eight Fiber Loop Mirror"
    Ricardo M. Silva, Azam Layeghi, Mohammad Ismail Zibaii, Hamin Latifi, Jose Luis Santos, Antonio Barbosa Lobo Ribeiro, Orlando Frazao
    IEEE PHOTONICS TECHNOLOGY LETTERS, Vol. 25, pp.745-749, 2013
33. "High resolution temperature independent refractive index measurement using differential white light interferometry"
    Carlos Gouveia, Mohammad Ismail Zibaii, Hamin Latifi, Manuel J. B. Marques, J. M. Baptista, Pedro A. S. Jorge
    SENSORS AND ACTUATORS B-CHEMICAL, Vol. 188, pp.1212-1217, 2013

Conference Paper

1. "Modeling and study of Rhodopsin proteins responses to laser light irradiance in ultrafast optogenetic control"
   Mohammad Ismail Zibaii
   , 2017
2. "Design and simulation of tip tapered fiber optic for controlling illumination of brain tissue in optogenetics"
   Mohammad Ismail Zibaii
   , 2017
3. "Design and fabrication a motorized Microdrive optrode for single"
   Hamin Latifi, Mohammad Ismail Zibaii
   , 2017
4. "Fiber probe microcavities for refractive index and temperature discrimination"
   Ricardo M. André, Stephen C. Warren-Smith, Martin Becker, Jan Dellith, Manfred Rothhardt, Mohammad Ismail Zibaii, Hamin Latifi, Manuel B. Marques, Hartmut Bartelt, Orlando Fraz?o
   Sixth European Workshop on Optical Fibre Sensors, 2016
5. "Real time monitoring of Pb2 -induced formation of G-quadruplex DNA with LPFG sensor"
   Z Bagheri, Hamin Latifi, Bijan Ranjbar, Mohammad Ismail Zibaii, Ebrahim Behroodi
   24th International Conference on Optical Fibre Sensors (OFS-24), No 9634 , 2015
6. "DNA aptamer-based fiber optic biosensor for selective and label-free detection of Dopamine"
   Mohammad Ismail Zibaii, Hamin Latifi, Amir Asadollahifanabonab, A. H. Bayat, A. Haghparast
   24th International Conference on Optical Fibre Sensors (OFS-24), No 9634 , 2015
7. "Simultaneous Measurement of Refractive Index and Temperature with Micro Silica Sphere Cavity Hybrid Fabry Perot Optical Fiber Sensor"
   Omid Reza Ranjbar Naeini, Hamin Latifi, Mohammad Ismail Zibaii
   24th International Conference on Optical Fibre Sensors (OFS-24), No 9634 , 2015
8. "Real-time monitoring of intracellular signal transduction in PC12 cells by Non-adiabatic tapered optical fiber biosensor"
   Mohammad Ismail Zibaii, Hamin Latifi, Amir Asadollahi Fanabonab, Zahra Noraeepoor,
   23rd International Conference on Optical Fibre Sensors, No 9157 , 2014
9. "Nonadiabatic tapered optical fiber biosensor for detection of potassium ion using DNA aptamer in neural application"
   Mohammad Ismail Zibaii, Hamin Latifi, Amir Asadollahi Fanabonab
   23rd International Conference on Optical Fibre Sensors, No 9157 , 2014
10. "high pressure discrimination based on optical fiber microsphere cavity fizeau interferometer"
    Omidreza Ranjbar Naini, Mohammad Ismail Zibaii, Soudabeh Nouri Jouybari, Leila Mehrvar, Hamin Latifi
    22nd international conference on optical fiber sensors (OFS-22), 2012
11. "sensing characteristics of tapered high-birefringent optical fiber"
    Azam Layeghi, Mohammad Ismail Zibaii, JALAL SADEGHI, Hamin Latifi
    22nd international conference on optical fiber sensors (OFS-22), pp.2-3, 2012
12. "enhanced sensitivity of gold modified tapered long period fiber grating for refractive index measurement"
    Zahra Taghipour, Mohammad Ismail Zibaii, Zahra Saeedian Taraei, Hamin Latifi
    22nd international conference on optical fiber sensors (OFS-22), pp.1-2, 2012
13. "temperature-independent pressure sensor using triangular-shape of suspended-core fiber"
    Mohammad Ismail Zibaii, Soudabeh Nouri Jouybari, Jalal Sadeghi, Hamin Latifi, P. A. S Jorge, Jens Kobelke, K Schuster, O Frazao
    22nd international conference on optical fiber sensors (OFS-22), pp.2-5, 2012
14. "study of antibacterial effect of nanosilver particle by tapered optical fiber sensor"
    Zahra Saeedian Taraei, Mohammad Ismail Zibaii, Seyed Masoud Hosseini, Hamin Latifi
    22nd international conference on optical fiber sensors (OFS-22), 2012
15. "lable free detection of quadruplex formation of peroxidase-like DNAzyme by tapered fiber optic biosensor"
    Zeinab Chenari, Mohammad Ismail Zibaii, Hamin Latifi
    22nd international conference on optical fiber sensors (OFS-22), pp.12-16, 2012
16. "interrogation system based on figure-of-eight fiber loop mirror"
    SILVA RICARDO, Azam Layeghi, Mohammad Ismail Zibaii, Hamin Latifi, j santos, a lobo ribeiro, o frazao
    22nd international conference on optical fiber sensors (OFS-22), pp.20-25, 2012
17. "temprature-independent pressure sensor using traingular-shape of suspended-core fiber"
    Mohammad Ismail Zibaii, Soudabeh Nouri Jouybari, Jalal Sadeghi, Hamin Latifi, k schuster, j kobelke, o frazao
    22nd international conference on optical fiber sensors (OFS-22), pp.60-65, 2012
18. "design and fabrication of SU-8MEMS electrostatically tunable optical fabry-perot cavity based on photolithography technique"
    Leila Mehrvar, Soudabeh Nouri Jouybari, Majid Taghavi Dehaghani, Frazin Beigi Azarbolagh, Mohammad Sadegh chari, Mohammad Ismail Zibaii, Hamin Latifi
    22nd international conference on optical fiber sensors (OFS-22), pp.1-4, 2012
19. "temprature independent refrative index measurement using white light interferometry"
    C Gouveia, Mohammad Ismail Zibaii, Hamin Latifi, M.J Marquesa, J.M Baptistaa, P.A.S Jorgea
    22nd international conference on optical fiber sensors (OFS-22), pp.5-9, 2012
20. ""
    Azam Layeghi, Hamin Latifi, Mohammad Ismail Zibaii, Omid Reza Ranjbar Naeini
    26th Iranian Conference on Optics and Photonics (ICOP 2020) and the 12th Iranian Conference on Photonics Engineering and Technology (ICPET 2020), 2020
21. ""
    Mir Hossein Seyed Nazari, Pouria Ghasemi illkhani abad, Seyedeh Mahshad Hosseini, Fatemeh Arefnia, Javad Fahanik Bbaei, Afsaneh Eliasi, Mohammad Ismail Zibaii
    26th Iranian Conference on Optics and Photonics (ICOP 2020) and the 12th Iranian Conference on Photonics Engineering and Technology (ICPET 2020), pp.557-560, 2020
22. ""
    Hedieh Karimitar, Pouria Ghasemi illkhani abad, Mohammad Hosseini beyram abad, fatemeh arefneia, Seyedeh Mahshad Hosseini, Mohammad Ismail Zibaii, leila dargahi
    26th Iranian Conference on Optics and Photonics (ICOP 2020) and the 12th Iranian Conference on Photonics Engineering and Technology (ICPET 2020), pp.713-716, 2020
23. ""
    fatemeh arefneia, Seyedeh Mahshad Hosseini, Hedieh Karimitar, Amir Asadollahi Fanabonab, Firoozeh Ghaneie, Mohammad Ismail Zibaii, Hamin Latifi
    26th Iranian Conference on Optics and Photonics (ICOP 2020) and the 12th Iranian Conference on Photonics Engineering and Technology (ICPET 2020), pp.969-972, 2020
24. ""
    Mir Hossein Seyed Nazari, sara Chavoshi nejad, Mohammad Hosseini beyram abad, Hedieh Karimitar, leila dargahi, Hamin Latifi, Mohammad Ismail Zibaii
    26th Iranian Conference on Optics and Photonics (ICOP 2020) and the 12th Iranian Conference on Photonics Engineering and Technology (ICPET 2020), pp.561-564, 2020
25. "The role of NMDA receptor in anterior cingulate cortex caudate putamen circuit performance involved in autistic like behaviours"
    ELHAM SADAT SEYEDJAVAD JAVAHERI, Mohammad Reza Bigdeli, Mohammad Ismail Zibaii
    The 5th Iranian Human Brain Mapping Congress, 2018
26. "Design and fabrication wireless closed loop optogenetics system"
    Mohammad Ismail Zibaii
    6th Basic and Clinical Neuroscience Congress 2017, 2017
27. ""
    Zahra Saeedian tarie, Mohammad Ismail Zibaii, Zahra Taghipour, Hamin Latifi
    , 2014